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双语推荐:AIM理论

采用量子化学方法中的密度泛函理论B3LYP方法,在B3LYP/6-311++G(d,p)基组水平上,对直链酸(甲酸至庚酸)与单分子水形成的体系进行结构优化和频率计算,从分子水平上研究了体系的相关的结构参数、电荷分布以及结合能,运用AIM理论分析了体系的电了密度拓扑。结果表明:直链酸与水形成两个氢键,其中羧基中氢原子作为质子供体的氢键1的键能强于水的氢作为质子供体的氢键2的键能。氢键1对体系的结合能影响起主导作用。稳定构型为六元环构型。直链酸与水结合能不随碳链增长呈明显变化,在(38.7-39.7)kJ/mol之间。
Based on B3LYP method in quantum chemistry methods, the optimized structure and frequency of the system of linear chain acid (methane acid to heptoic acid) and single-molecule water was calculated using the GAUSSIAN09 at B3LYP/6-311 ++G (d, p) level. Quantum chemical simulation was used to study the structure changes, charge distribution, frequency changes and the binding energy. AIM theory was used to study the electron density of the system topology. The results show that: all the systems form two hydrogen bonds, the hydrogen 1 (the hydrogen atom in the carboxyl group as a proton donor) is stronger than the hydrogen 2 (the hydrogen atom in water as a proton donor). The hydrogen 1 plays a leading role of affecting the binding energy. Stable configuration for the system is a six-membered ring. The binding energy is in the range of (38.7 - 39.7) kJ/mol and it doesn’t change a lot with the growth of the carbon.

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采用密度泛函理论(DFT)研究了钯催化苯乙烯与N-氟代双苯磺酰胺反应机理.在B3LYP/6-311+G*基组水平上对反应过程中所有反应物、过渡态、中间体以及产物的几何构型进行了优化,通过能量和振动分析确认了过渡态的真实性;并且在相同基组水平上应用自然键轨道( NBO)和分子中的原子( AIM理论分析了这些化合物的成键特征和轨道间的相互作用.研究发现了两条可能的反应通道IA与IB,其控制步骤活化能分别为17.81 kJ.mol-1、56.04kJ.mol-1,由以上比较结果可以看出,IA通道具有较低的活化能,即IA通道为整个反应的最优反应通道,与实验结果一致.此外我们还研究了溶剂对反应的影响.
The reaction mechanism of Styrenes with N-fluorobenzenesulfonimide catalyzed by palladium was studied using the density functional theory at B3LYP/6-311+G*level.The geometric configurations of react-ants, intermediates, transition states and products were optimized.Nature bond orbital ( NBO) and atoms in molecules ( AIM) theories were used to discuss the bond nature and orbital interactions at the same levels.Two possible reaction pathways, IA and IB, were investigated and their activation energies of the limiting steps are17.81 and 56.04 kJ.mol-1 , respectively.The reaction is the rate determining step.From the above results, the IA channel has lower activation energy.So IA channel is the main reaction channel in the whole reaction. These points are in agreement with the experimental results.The influence of solvent on the reaction was calcu-lated.

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在MP2水平上,采用全电子基组,对C2H2与HX(X=F,Cl,Br,I)相互作用进行了研究.构型优化同时进行频率验证,得到4个T型结构的稳定复合物,相互作用能在-12.761~-7.086 kJ/mol之间.自然键轨道(NBO)与分子中的原子(AIM)理论分析表明,形成复合物分子间的电荷转移量都很少,最大仅为0.009 a.u.,作用强度与氢键类似.对称性匹配微拢理论(SAPT)能量分解数据表明,对于C2H2…HX(X=F,Cl,Br,I)体系,从F到I,静电作用逐渐减弱,色散作用逐渐增强;相互作用能中对吸引能的贡献主要为静电能和色散能,二者之和占到80%以上,诱导能所占的比例很小,卤化氢与乙炔分子间相互作用的本质为静电作用和色散作用.
The interactions of HX(X=F,Cl,Br,I) and C2H2 were investigated at the MP2 level by using all-electron basis sets.And four T-shaped stable complexes were obtained,their interaction energy between-12.761 and-7.086 kJ/mol.The natural bond orbital(NBO) and the Atoms in Molecules(AIM) analysis reveals that the intermolecular number of charge-transfer is negligible for these four complexes,the maximum is only 0.009 a.u.,and the bonds strength of these complexes is similar to hydrogen bonds.The symmetry adapted perturbation theory(SAPT) calculations were carried out to decompose the binding energy of these complexes into individual interaction energy components.The results show that the contribution electrostatic energies decrease and the dispersion energy increases on moving from HF to HI,both electrostatic and dispersive energies are over eighty percent of these interaction energies,and the induction energies are weaker.The nature of the HX(X=F,Cl,Br,I) and the C2H2 interactions is electros

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运用 AIM理论在 B97D 水平上计算了2-丁炔-1,4-二基二(2,3,4,5,6-五氟苯基碳酸酯)1,2-丁炔-1,4-二基二(4-氟苯基碳酸酯)2及2-丁炔-1,4-二基二(2,3,4,5,6-五氟苯氨基甲酸酯)3中的分子间有机氟 C -H…F -C 氢键.这些分子间氢键为闭壳相互作用.尽管晶体1中 H…F 距离接近经典氢键,但是该有机氟氢键仍为弱氢键.NBO 分析表明,研究的有机氟 C -H…F -C 氢键存在明显的电荷转移,用电荷转移合理地解释了分子1采取顺式结构.
The intermolecular C-H…F-C hydrogen bonds in crystalline but -2 -yne -1 ,4 -diyl bis(2, 3,4,5,6 -pentafluorophenylcarbonate)1 ,but -2 -yne -1 ,4 -diyl bis(4 -fluorophenylcarbonate)2,and but -2 -yne -1 ,4 -diyl bis(2,3,4,5,6 -pentafluorophenylcarbamate)3 are characterized by using AIMtheory at the B97D level.Criteria based on a topological analysis of the electron density were applied.These intermolecular C-H…F-C hydrogen bonds present typical properties of closed -shell interaction.Our study revealed that organic fluorine hydrogen bond in crystalline 1 is still weak although the distance of H…F is extremely short.NBO analyses indicate that charge transfer (nF→σ*C-H)is significant even for such weak C-H…F-C hydrogen bonds.The significantly large stabilizing role of charge transfer in crystalline 1 compared with 2,3 gives an explanation for the syn -conformation of organic molecule 1 .

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采用密度泛函理论(DFT)中的B3LYP方法,研究了Cu(I)催化六氢氮杂卓衍生物偶联反应的微观反应机理.在6-31+G(d)的水平下,对反应路径中的所有反应物、中间物、过渡态和产物进行了构型优化,通过振动频率分析及内禀反应坐标(IRC)计算对过渡态进行了验证,应用自然键轨道理论(NBO)和分子中的原子理论(AIM)分析了这些物质的轨道间相互作用及成键特征.报道了可能的反应通道CuI+R1+R2→IM2→TS1→IM3→TS2→IM4→IM5→TS3→IM6→TS4→IM7→P1→P1+IM8→IM9a→TS5a→IM10a→TS6a→IM11a→IM12→TS7→IM13→TS8→IM14→TS9→IM15→P2活化能相对较低,是主要的反应通道.同时对比研究了在没有Cu(Ι)催化剂时,反应的活化能为199.01kJ/mol,而在Cu(Ι)催化下,反应活化能为176.94kJ/mol,说明了Cu(Ι)催化剂促进了反应的进行.
The mechanism of 2-Perhydroazepinone catalyzed by Cu (Ι)was studied by the density func-tional theory.The geometric configurations of reactants,intermediates,transition states and products were optimized at B3 LYP/6-3 1+G (d)level.Vibration analysis and intrinsic reaction coordinate (IRC) of the reaction were calculated.Atoms in molecules (AIM)theories and nature bond orbital (NBO)have been used to discuss orbits interaction and bond natures.The reaction mechanism is CuI+R1+R2 →IM2→TS1→IM3→TS2→IM4→IM5→TS3→IM6→TS4→IM7→P1→P1+IM8→IM9a→TS5a→IM10a→TS6 a→IM1 1 a→IM1 2→TS7→IM1 3→TS8→IM1 4→TS9→IM1 5→P2. The activation energy of the limit-ing step is 176.94 KJ/mol,but without Cu-catalyzed,it becomes 199.01 KJ/mol,indicating that Cu(Ι) promotes the reaction.

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采用密度泛函理论(DFT)中的B3LYP方法,在6-31+G(d)基组水平下,研究了碘催化苯乙醛和苄胺发生氧化环化合成多取代咪唑的微观反应机理.对反应通道上反应物、中间体、过渡态和产物进行了结构优化,对优化后的各化合物在B3LYP/6-311++G(d,p)基组下进行单点能计算和零点能矫正,通过振动频率分析及内禀反应坐标(IRC)计算对过渡态进行了验证,并运用自然键轨道理论(NBO)和分子中的原子理论(AIM)分析了化合物的轨道间相互作用及成键特征.研究结果发现:无碘催化时,苯乙醛和苄胺发生氧化环化合成多取代咪唑,其反应速控步骤活化能为514.32 kJ·mol-1,在碘催化作用下,反应速控步骤活化能为145.94 kJ·mol-1.比较研究结果,说明碘能有效催化该反应的进行,碘的催化性能主要表现在活化苯乙醛乙基上的C—H键.我们还采用连续介质模型(PCM)比较研究了4种溶剂化作用对反应的影响,得到的研究结果与实验相吻合.理论预测了有机溶剂二甲亚砜(DMSO)能有效地提高反应产率.
The reaction mechanism from phenylacetaldehyde and benzylamine to polysubstituted imidazole catalyzed byΙ2 was studied by the density functional theory. All of the reactants, intermediates, transition states and product were optimized at B3LYP/6-31+G(d) level. The single point energy and zero point energy correction were calculated for the optimized con-figuration of each compound at B3LYP/6-311++G(d,p) level. Transition states have been confirmed via vibration analysis and intrinsic reactions coordinate (IRC), and nature bond orbital (NBO) and atoms in molecules (AIM) theories have been used to analysis orbits interaction and bond natures. Our results showed that the activation energy of the rate-determining step was 514.32 kJ?mol-1 without I2-catalyzed, however, the activation energy of the rate-determining step was 145.94 kJ?mol-1 with I2-catalyzed. It indicated that I2 catalyst promoted reaction effectively, and the C-H bond of ethyl of phenylacetaldehyde was activated b

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